Look at the classwork I gave you containing sequences 1, 2, 3 when sequence 2 and 3 were aligned to sequence and answer questions that follow.
1) Draw a dotplot when sequence 2 is aligned to sequence 1 using a window size of 3 and a stringency of 2.
2) If you increase the window size to 5 and keep the stringency to 2, show how the plot would look like.
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